clstutils
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see clstutils.
Tools for performing taxonomic assignment.
Bioconductor version: 3.9
Tools for performing taxonomic assignment based on phylogeny using pplacer and clst.
Author: Noah Hoffman
Maintainer: Noah Hoffman <ngh2 at uw.edu>
Citation (from within R, enter
citation("clstutils")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("clstutils")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("clstutils")| clst | R Script | |
| clstutils | R Script | |
| Reference Manual |
Details
| biocViews | Classification, QualityControl, Sequencing, Software, Visualization |
| Version | 1.32.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13 years) |
| License | GPL-3 |
| Depends | R (>= 2.10), clst, rjson, ape |
| Imports | lattice, RSQLite |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, RSVGTipsDevice |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | clstutils_1.32.0.tar.gz |
| Windows Binary | clstutils_1.32.0.zip |
| Mac OS X 10.11 (El Capitan) | clstutils_1.32.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/clstutils |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/clstutils |
| Bioc Package Browser | https://code.bioconductor.org/browse/clstutils/ |
| Package Short Url | https://bioconductor.org/packages/clstutils/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |