affyQCReport
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see affyQCReport.
QC Report Generation for affyBatch objects
Bioconductor version: 3.9
This package creates a QC report for an AffyBatch object. The report is intended to allow the user to quickly assess the quality of a set of arrays in an AffyBatch object.
Author: Craig Parman <craig.parman at bifx.org>, Conrad Halling <conrad.halling at bifx.org>, Robert Gentleman
Maintainer: Craig Parman <craig.parman at bifx.org>
citation("affyQCReport")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affyQCReport")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("affyQCReport")| affyQCReport: Methods for Generating Affymetrix QC Reports | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, QualityControl, Software |
| Version | 1.62.0 |
| In Bioconductor since | BioC 1.7 (R-2.2) (18.5 years) |
| License | LGPL (>= 2) |
| Depends | Biobase(>= 1.13.16), affy, lattice |
| Imports | affy, affyPLM, Biobase, genefilter, graphics, grDevices, lattice, RColorBrewer, simpleaffy, stats, utils, xtable |
| System Requirements | |
| URL |
See More
| Suggests | tkWidgets(>= 1.5.23), affydata(>= 1.4.1) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | BiocCaseStudies |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | affyQCReport_1.62.0.tar.gz |
| Windows Binary | affyQCReport_1.62.0.zip |
| Mac OS X 10.11 (El Capitan) | affyQCReport_1.62.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/affyQCReport |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/affyQCReport |
| Bioc Package Browser | https://code.bioconductor.org/browse/affyQCReport/ |
| Package Short Url | https://bioconductor.org/packages/affyQCReport/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |