Trendy
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Trendy.
Breakpoint analysis of time-course expression data
Bioconductor version: 3.9
Trendy implements segmented (or breakpoint) regression models to estimate breakpoints which represent changes in expression for each feature/gene in high throughput data with ordered conditions.
Author: Rhonda Bacher and Ning Leng
Maintainer: Rhonda Bacher <rbacher at ufl.edu>
citation("Trendy")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Trendy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Trendy")| Trendy Vignette | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ImmunoOncology, RNASeq, Regression, Software, TimeCourse |
| Version | 1.6.4 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL-3 |
| Depends | R (>= 3.4) |
| Imports | stats, utils, graphics, grDevices, segmented, gplots, parallel, magrittr, BiocParallel, DT, S4Vectors, SummarizedExperiment, methods, shiny, shinyFiles |
| System Requirements | |
| URL | https://github.com/rhondabacher/Trendy |
See More
| Suggests | BiocStyle, knitr, rmarkdown, devtools |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Trendy_1.6.4.tar.gz |
| Windows Binary | Trendy_1.6.4.zip |
| Mac OS X 10.11 (El Capitan) | Trendy_1.6.4.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Trendy |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Trendy |
| Bioc Package Browser | https://code.bioconductor.org/browse/Trendy/ |
| Package Short Url | https://bioconductor.org/packages/Trendy/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |