SNPediaR

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see SNPediaR.

Query data from SNPedia

Bioconductor version: 3.9

SNPediaR provides some tools for downloading and parsing data from the SNPedia web site . The implemented functions allow users to import the wiki text available in SNPedia pages and to extract the most relevant information out of them. If some information in the downloaded pages is not automatically processed by the library functions, users can easily implement their own parsers to access it in an efficient way.

Author: David Montaner [aut, cre]

Maintainer: David Montaner <david.montaner at gmail.com>

Citation (from within R, enter citation("SNPediaR")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPediaR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SNPediaR")

SNPediaR	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	SNP, Software, VariantAnnotation
Version	1.10.0
In Bioconductor since	BioC 3.4 (R-3.3) (7.5 years)
License	GPL-2
Depends	R (>= 3.0.0)
Imports	RCurl, jsonlite
System Requirements
URL	https://github.com/genometra/SNPediaR
Bug Reports	https://github.com/genometra/SNPediaR/issues

Suggests	BiocStyle, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SNPediaR_1.10.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)	SNPediaR_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SNPediaR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SNPediaR
Bioc Package Browser	https://code.bioconductor.org/browse/SNPediaR/
Package Short Url	https://bioconductor.org/packages/SNPediaR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive