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RUVcorr

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RUVcorr.

Removal of unwanted variation for gene-gene correlations and related analysis


Bioconductor version: 3.9

RUVcorr allows to apply global removal of unwanted variation (ridged version of RUV) to real and simulated gene expression data.

Author: Saskia Freytag

Maintainer: Saskia Freytag <freytag.s at wehi.edu.au>

Citation (from within R, enter citation("RUVcorr")):

Installation

To install this package, start R (version "3.6") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RUVcorr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RUVcorr")
RUVcorr PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GeneExpression, Normalization, Software
Version 1.16.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-2
Depends
Imports corrplot, MASS, stats, lattice, grDevices, gridExtra, snowfall, psych, BiocParallel, grid, bladderbatch, reshape2
System Requirements
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Suggests knitr, BiocStyle, hgu133a2.db
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RUVcorr_1.16.0.tar.gz
Windows Binary RUVcorr_1.16.0.zip
Mac OS X 10.11 (El Capitan) RUVcorr_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RUVcorr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RUVcorr
Bioc Package Browser https://code.bioconductor.org/browse/RUVcorr/
Package Short Url https://bioconductor.org/packages/RUVcorr/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive