RTNduals
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see RTNduals.
Analysis of co-regulation and inference of 'dual regulons'
Bioconductor version: 3.9
RTNduals is a tool that searches for possible co-regulatory loops between regulon pairs generated by the RTN package. It compares the shared targets in order to infer 'dual regulons', a new concept that tests whether regulators can co-operate or compete in influencing targets.
Author: Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>, Clarice Groeneveld <clari.groeneveld at gmail.com>
citation("RTNduals")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RTNduals")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RTNduals")| RTNduals: analysis of co-regulation and inference of dual regulons. | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, GeneRegulation, GraphAndNetwork, NetworkEnrichment, NetworkInference, Software |
| Version | 1.8.3 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5), RTN(>= 2.6.3), methods |
| Imports | graphics, grDevices, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | RTNsurvival |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RTNduals_1.8.3.tar.gz |
| Windows Binary | RTNduals_1.8.3.zip |
| Mac OS X 10.11 (El Capitan) | RTNduals_1.8.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RTNduals |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RTNduals |
| Bioc Package Browser | https://code.bioconductor.org/browse/RTNduals/ |
| Package Short Url | https://bioconductor.org/packages/RTNduals/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |