Menu

QuartPAC

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see QuartPAC.

Identification of mutational clusters in protein quaternary structures.


Bioconductor version: 3.9

Identifies clustering of somatic mutations in proteins over the entire quaternary structure.

Author: Gregory Ryslik, Yuwei Cheng, Hongyu Zhao

Maintainer: Gregory Ryslik <gregory.ryslik at yale.edu>

Citation (from within R, enter citation("QuartPAC")):

Installation

To install this package, start R (version "3.6") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("QuartPAC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("QuartPAC")
SpacePAC: Identifying mutational clusters in 3D protein space using simulation PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, Proteomics, Software, SomaticMutation
Version 1.16.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-2
Depends iPAC, GraphPAC, SpacePAC, data.table
Imports
System Requirements
URL
See More
Suggests RUnit, BiocGenerics, rgl
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package QuartPAC_1.16.0.tar.gz
Windows Binary QuartPAC_1.16.0.zip
Mac OS X 10.11 (El Capitan) QuartPAC_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/QuartPAC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/QuartPAC
Bioc Package Browser https://code.bioconductor.org/browse/QuartPAC/
Package Short Url https://bioconductor.org/packages/QuartPAC/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive