ProteomicsAnnotationHubData
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ProteomicsAnnotationHubData .
Transform public proteomics data resources into Bioconductor Data Structures
Bioconductor version: 3.9
These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.
Author: Gatto Laurent [aut, cre], Sonali Arora [aut]
Maintainer: Laurent Gatto <lg390 at cam.ac.uk>
citation("ProteomicsAnnotationHubData")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ProteomicsAnnotationHubData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ProteomicsAnnotationHubData")| Proteomics Data in Annotation Hub | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Proteomics, Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | Artistic-2.0 |
| Depends | AnnotationHub(>= 2.1.45), AnnotationHubData |
| Imports | mzR(>= 2.3.2), MSnbase, Biostrings, GenomeInfoDb, utils, Biobase, BiocManager, RCurl |
| System Requirements | |
| URL | https://github.com/lgatto/ProteomicsAnnotationHubData |
| Bug Reports | https://github.com/lgatto/ProteomicsAnnotationHubData/issues |
See More
| Suggests | knitr, BiocStyle, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ProteomicsAnnotationHubData_1.14.0.tar.gz |
| Windows Binary | ProteomicsAnnotationHubData_1.14.0.zip |
| Mac OS X 10.11 (El Capitan) | ProteomicsAnnotationHubData_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ProteomicsAnnotationHubData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ProteomicsAnnotationHubData |
| Bioc Package Browser | https://code.bioconductor.org/browse/ProteomicsAnnotationHubData/ |
| Package Short Url | https://bioconductor.org/packages/ProteomicsAnnotationHubData/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |