PowerExplorer
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PowerExplorer.
Power Estimation Tool for RNA-Seq and proteomics data
Bioconductor version: 3.9
Estimate and predict power among groups and multiple sample sizes with simulated data, the simulations are operated based on distribution parameters estimated from the provided input dataset.
Author: Xu Qiao [aut, cre], Laura Elo [cph]
Maintainer: Xu Qiao <xu.qiao at utu.fi>
citation("PowerExplorer")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PowerExplorer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PowerExplorer")| PowerExplorer Manual | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ChIPSeq, Coverage, DifferentialExpression, ImmunoOncology, MultipleComparison, Proteomics, RNASeq, Sequencing, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0), SummarizedExperiment |
| Imports | DESeq2, ROTS, vsn, stats, utils, methods, gridExtra, MASS, data.table, ggplot2, Biobase, S4Vectors, BiocParallel |
| System Requirements | |
| URL | https://gitlab.utu.fi/CompBioMedNGSTools/PowerExplorer |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PowerExplorer_1.4.0.tar.gz |
| Windows Binary | PowerExplorer_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | PowerExplorer_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PowerExplorer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PowerExplorer |
| Bioc Package Browser | https://code.bioconductor.org/browse/PowerExplorer/ |
| Package Short Url | https://bioconductor.org/packages/PowerExplorer/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |