PepsNMR
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PepsNMR.
Pre-process 1H-NMR FID signals
Bioconductor version: 3.9
This package provides R functions for common pre-procssing steps that are applied on 1H-NMR data. It also provides a function to read the FID signals directly in the Bruker format.
Author: Manon Martin [aut, cre], Bernadette Govaerts [aut, ths], Benoît Legat [aut], Pascal de Tullio [dtc], Bruno Boulanger [ctb], Paul H.C. Eilers [ctb], Julien Vanwinsberghe [ctb]
Maintainer: Manon Martin <manon.martin at uclouvain.be>
citation("PepsNMR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PepsNMR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PepsNMR")| Application of PepsNMR on the Human Serum dataset | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, Metabolomics, Preprocessing, Software, Visualization |
| Version | 1.2.1 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | GPL-2 | file LICENSE |
| Depends | R (>= 3.5) |
| Imports | Matrix, ptw, ggplot2, gridExtra, matrixStats, reshape2, methods, graphics, stats |
| System Requirements | |
| URL | https://github.com/ManonMartin/PepsNMR |
| Bug Reports | https://github.com/ManonMartin/PepsNMR/issues |
See More
| Suggests | knitr, markdown, rmarkdown, BiocStyle, PepsNMRData |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | ASICS |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PepsNMR_1.2.1.tar.gz |
| Windows Binary | PepsNMR_1.2.1.zip |
| Mac OS X 10.11 (El Capitan) | PepsNMR_1.2.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PepsNMR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PepsNMR |
| Bioc Package Browser | https://code.bioconductor.org/browse/PepsNMR/ |
| Package Short Url | https://bioconductor.org/packages/PepsNMR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |