Path2PPI
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Path2PPI.
Prediction of pathway-related protein-protein interaction networks
Bioconductor version: 3.9
Package to predict protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI predicts PPI networks based on sets of proteins which can belong to a certain pathway from well-established model organisms. It helps to combine and transfer information of a certain pathway or biological process from several reference organisms to one target organism. Path2PPI only depends on the sequence similarity of the involved proteins.
Author: Oliver Philipp [aut, cre], Ina Koch [ctb]
Maintainer: Oliver Philipp <contact at oliverphilipp.info>
citation("Path2PPI")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Path2PPI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Path2PPI")| Path2PPI - A brief tutorial | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Network, NetworkInference, Pathways, Proteomics, Software, SystemsBiology |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.2.1), igraph (>= 1.0.1), methods |
| Imports | |
| System Requirements | |
| URL | http://www.bioinformatik.uni-frankfurt.de/ |
See More
| Suggests | knitr, rmarkdown, RUnit, BiocGenerics, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Path2PPI_1.14.0.tar.gz |
| Windows Binary | Path2PPI_1.14.0.zip |
| Mac OS X 10.11 (El Capitan) | Path2PPI_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Path2PPI |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Path2PPI |
| Bioc Package Browser | https://code.bioconductor.org/browse/Path2PPI/ |
| Package Short Url | https://bioconductor.org/packages/Path2PPI/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |