PING
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PING.
Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data
Bioconductor version: 3.9
Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.
Author: Xuekui Zhang <xuezhang at jhsph.edu>, Raphael Gottardo <raph at stat.ubc.ca>, Sangsoon Woo <swoo at fhcrc.org>
Maintainer: Renan Sauteraud <rsautera at fhcrc.org>
Citation (from within R, enter
citation("PING")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PING")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PING")| The PING users guide | R Script | |
| Using PING with paired-end sequencing data | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, Sequencing, Software, StatisticalMethod, Visualization |
| Version | 2.28.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (12 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.15.0), chipseq, IRanges, GenomicRanges |
| Imports | methods, PICS, graphics, grDevices, stats, Gviz, fda, BSgenome, stats4, BiocGenerics, IRanges, S4Vectors |
| System Requirements | |
| URL |
See More
| Suggests | parallel, ShortRead, rtracklayer |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PING_2.28.0.tar.gz |
| Windows Binary | PING_2.28.0.zip |
| Mac OS X 10.11 (El Capitan) | PING_2.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PING |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PING |
| Bioc Package Browser | https://code.bioconductor.org/browse/PING/ |
| Package Short Url | https://bioconductor.org/packages/PING/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |