PCAN
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PCAN.
Phenotype Consensus ANalysis (PCAN)
Bioconductor version: 3.9
Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).
Author: Matthew Page and Patrice Godard
Maintainer: Matthew Page <matthew.page at ucb.com> and Patrice Godard <patrice.godard at gmail.com>
citation("PCAN")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PCAN")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PCAN")| Assessing gene relevance for a set of phenotypes | HTML | R Script |
| Reference Manual |
Details
| biocViews | Annotation, FunctionalPrediction, Genetics, Network, Pathways, Sequencing, Software, VariantAnnotation |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | CC BY-NC-ND 4.0 |
| Depends | R (>= 3.3), BiocParallel |
| Imports | grDevices, stats |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown, reactome.db, STRINGdb |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PCAN_1.12.0.tar.gz |
| Windows Binary | PCAN_1.12.0.zip |
| Mac OS X 10.11 (El Capitan) | PCAN_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PCAN |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PCAN |
| Bioc Package Browser | https://code.bioconductor.org/browse/PCAN/ |
| Package Short Url | https://bioconductor.org/packages/PCAN/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |