Mergeomics
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Mergeomics.
Integrative network analysis of omics data
Bioconductor version: 3.9
The Mergeomics pipeline serves as a flexible framework for integrating multidimensional omics-disease associations, functional genomics, canonical pathways and gene-gene interaction networks to generate mechanistic hypotheses. It includes two main parts, 1) Marker set enrichment analysis (MSEA); 2) Weighted Key Driver Analysis (wKDA).
Author: Ville-Petteri Makinen, Le Shu, Yuqi Zhao, Zeyneb Kurt, Bin Zhang, Xia Yang
Maintainer: Zeyneb Kurt <zeynebkurt at gmail.com>
citation("Mergeomics")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Mergeomics")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Mergeomics")| Mergeomics | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.0.1) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Mergeomics_1.12.0.tar.gz |
| Windows Binary | Mergeomics_1.12.0.zip |
| Mac OS X 10.11 (El Capitan) | Mergeomics_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Mergeomics |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Mergeomics |
| Bioc Package Browser | https://code.bioconductor.org/browse/Mergeomics/ |
| Package Short Url | https://bioconductor.org/packages/Mergeomics/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |