MSstatsTMT

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MSstatsTMT.

Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling

Installation

To install this package, start R (version "3.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MSstatsTMT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsTMT")

MSstatsTMT User Guide	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	ImmunoOncology, MassSpectrometry, Proteomics, Software
Version	1.2.7
In Bioconductor since	BioC 3.8 (R-3.5) (5.5 years)
License	Artistic-2.0
Depends	R (>= 3.6)
Imports	limma, lme4, dplyr, tidyr, nlme, statmod, reshape2, data.table, matrixStats, stats, utils, ggplot2, grDevices, graphics, MSstats
System Requirements
URL	http://msstats.org/msstatstmt/
Bug Reports	https://groups.google.com/forum/#!forum/msstats

See More

Suggests	BiocStyle, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MSstatsTMT_1.2.7.tar.gz
Windows Binary	MSstatsTMT_1.2.7.zip
Mac OS X 10.11 (El Capitan)	MSstatsTMT_1.2.7.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MSstatsTMT
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MSstatsTMT
Bioc Package Browser	https://code.bioconductor.org/browse/MSstatsTMT/
Package Short Url	https://bioconductor.org/packages/MSstatsTMT/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.9	Source Archive