IWTomics
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see IWTomics.
Interval-Wise Testing for Omics Data
Bioconductor version: 3.9
Implementation of the Interval-Wise Testing (IWT) for omics data. This inferential procedure tests for differences in "Omics" data between two groups of genomic regions (or between a group of genomic regions and a reference center of symmetry), and does not require fixing location and scale at the outset.
Author: Marzia A Cremona, Alessia Pini, Francesca Chiaromonte, Simone Vantini
Maintainer: Marzia A Cremona <mac78 at psu.edu>
citation("IWTomics")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IWTomics")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IWTomics")| Introduction to IWTomics | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, DifferentialExpression, DifferentialMethylation, DifferentialPeakCalling, GenomeAnnotation, MultipleComparison, Software, StatisticalMethod |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | GPL (>=2) |
| Depends | GenomicRanges |
| Imports | parallel, gtable, grid, graphics, methods, IRanges, KernSmooth, fda, S4Vectors, grDevices, stats, utils, tools |
| System Requirements | |
| URL |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | IWTomics_1.8.0.tar.gz |
| Windows Binary | IWTomics_1.8.0.zip |
| Mac OS X 10.11 (El Capitan) | IWTomics_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/IWTomics |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/IWTomics |
| Bioc Package Browser | https://code.bioconductor.org/browse/IWTomics/ |
| Package Short Url | https://bioconductor.org/packages/IWTomics/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |