GladiaTOX
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GladiaTOX.
R Package for Processing High Content Screening data
Bioconductor version: 3.9
GladiaTOX R package is an open-source, flexible solution to high-content screening data processing and reporting in biomedical research. GladiaTOX takes advantage of the tcpl core functionalities and provides a number of extensions: it provides a web-service solution to fetch raw data; it computes severity scores and exports ToxPi formatted files; furthermore it contains a suite of functionalities to generate pdf reports for quality control and data processing.
Author: Vincenzo Belcastro [aut, cre], Dayne L Filer [aut], Stephane Cano [aut]
Maintainer: PMP S.A. R Support <DL.RSupport at pmi.com>
citation("GladiaTOX")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GladiaTOX")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GladiaTOX")| GladiaTOX | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Normalization, Preprocessing, QualityControl, Software, WorkflowStep |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-2 |
| Depends | R (>= 3.6.0), data.table (>= 1.9.4) |
| Imports | DBI, RMySQL, RSQLite, numDeriv, RColorBrewer, parallel, stats, methods, graphics, grDevices, xtable, tools, brew, stringr, RJSONIO, ggplot2, ggrepel, tidyr, utils, RCurl, XML |
| System Requirements | |
| URL |
See More
| Suggests | roxygen2, knitr, rmarkdown, testthat, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GladiaTOX_1.0.0.tar.gz |
| Windows Binary | GladiaTOX_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | GladiaTOX_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GladiaTOX |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GladiaTOX |
| Bioc Package Browser | https://code.bioconductor.org/browse/GladiaTOX/ |
| Package Short Url | https://bioconductor.org/packages/GladiaTOX/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |