GRmetrics
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GRmetrics.
Calculate growth-rate inhibition (GR) metrics
Bioconductor version: 3.9
Functions for calculating and visualizing growth-rate inhibition (GR) metrics.
Author: Nicholas Clark
Maintainer: Nicholas Clark <nicholas.clark00 at gmail.com>, Mario Medvedovic <medvedm at ucmail.uc.edu>
Citation (from within R, enter
citation("GRmetrics")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GRmetrics")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GRmetrics")| GRmetrics: an R package for calculation and visualization of dose-response metrics based on growth rate inhibition | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBasedAssays, CellBiology, ImmunoOncology, Software, TimeCourse, Visualization |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.3), SummarizedExperiment |
| Imports | drc, plotly, ggplot2, S4Vectors |
| System Requirements | |
| URL | https://github.com/uc-bd2k/GRmetrics |
| Bug Reports | https://github.com/uc-bd2k/GRmetrics/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GRmetrics_1.10.0.tar.gz |
| Windows Binary | GRmetrics_1.10.0.zip |
| Mac OS X 10.11 (El Capitan) | GRmetrics_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GRmetrics |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GRmetrics |
| Bioc Package Browser | https://code.bioconductor.org/browse/GRmetrics/ |
| Package Short Url | https://bioconductor.org/packages/GRmetrics/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |