GOSim
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GOSim.
Computation of functional similarities between GO terms and gene products; GO enrichment analysis
Bioconductor version: 3.9
This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis
Author: Holger Froehlich <frohlich at bit.uni-bonn.de>
Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>
citation("GOSim")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GOSim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOSim")| GOsim | R Script | |
| Reference Manual |
Details
| biocViews | Clustering, GO, Pathways, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL (>= 2) |
| Depends | GO.db, annotate |
| Imports | org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | Rcpp |
| Enhances | igraph |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GOSim_1.22.0.tar.gz |
| Windows Binary | GOSim_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | GOSim_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GOSim |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GOSim |
| Bioc Package Browser | https://code.bioconductor.org/browse/GOSim/ |
| Package Short Url | https://bioconductor.org/packages/GOSim/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |