GA4GHshiny
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GA4GHshiny.
Shiny application for interacting with GA4GH-based data servers
Bioconductor version: 3.9
GA4GHshiny package provides an easy way to interact with data servers based on Global Alliance for Genomics and Health (GA4GH) genomics API through a Shiny application. It also integrates with Beacon Network.
Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb], Elizabeth Borgognoni [ctb]
Maintainer: Welliton Souza <well309 at gmail.com>
citation("GA4GHshiny")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GA4GHshiny")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GA4GHshiny")| GA4GHshiny | HTML | R Script |
| Reference Manual |
Details
| biocViews | GUI, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | GPL-3 |
| Depends | GA4GHclient |
| Imports | AnnotationDbi, BiocGenerics, dplyr, DT, GenomeInfoDb, openxlsx, GenomicFeatures, methods, purrr, S4Vectors, shiny, shinyjs, tidyr, shinythemes |
| System Requirements | |
| URL | https://github.com/labbcb/GA4GHshiny |
| Bug Reports | https://github.com/labbcb/GA4GHshiny/issues |
See More
| Suggests | BiocStyle, org.Hs.eg.db, knitr, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GA4GHshiny_1.6.0.tar.gz |
| Windows Binary | GA4GHshiny_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | GA4GHshiny_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GA4GHshiny |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GA4GHshiny |
| Bioc Package Browser | https://code.bioconductor.org/browse/GA4GHshiny/ |
| Package Short Url | https://bioconductor.org/packages/GA4GHshiny/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |