FoldGO
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see FoldGO.
Package for Fold-specific GO Terms Recognition
Bioconductor version: 3.9
FoldGO is a package designed to annotate gene sets derived from expression experiments and identify fold-change-specific GO terms.
Author: Daniil Wiebe <daniil.wiebe at gmail.com> [aut, cre]
Maintainer: Daniil Wiebe <daniil.wiebe at gmail.com>
Citation (from within R, enter
citation("FoldGO")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("FoldGO")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FoldGO")| FoldGO: a tool for fold-change-specific functional enrichment analysis | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GO, GeneExpression, Software |
| Version | 1.2.3 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.5) |
| Imports | topGO(>= 2.30.1), ggplot2 (>= 2.2.1), tidyr (>= 0.8.0), stats, methods |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, devtools, kableExtra |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | FoldGO_1.2.3.tar.gz |
| Windows Binary | FoldGO_1.2.3.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | FoldGO_1.2.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/FoldGO |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FoldGO |
| Bioc Package Browser | https://code.bioconductor.org/browse/FoldGO/ |
| Package Short Url | https://bioconductor.org/packages/FoldGO/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |