DEDS
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DEDS.
Differential Expression via Distance Summary for Microarray Data
Bioconductor version: 3.9
This library contains functions that calculate various statistics of differential expression for microarray data, including t statistics, fold change, F statistics, SAM, moderated t and F statistics and B statistics. It also implements a new methodology called DEDS (Differential Expression via Distance Summary), which selects differentially expressed genes by integrating and summarizing a set of statistics using a weighted distance approach.
Author: Yuanyuan Xiao <yxiao at itsa.ucsf.edu>, Jean Yee Hwa Yang <jeany at maths.usyd.edu.au>.
Maintainer: Yuanyuan Xiao <yxiao at itsa.ucsf.edu>
citation("DEDS")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DEDS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DEDS")| DEDS.pdf | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, Software |
| Version | 1.58.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | LGPL |
| Depends | R (>= 1.7.0) |
| Imports | |
| System Requirements | |
| URL |
See More
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| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DEDS_1.58.0.tar.gz |
| Windows Binary | DEDS_1.58.0.zip |
| Mac OS X 10.11 (El Capitan) | DEDS_1.58.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DEDS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DEDS |
| Bioc Package Browser | https://code.bioconductor.org/browse/DEDS/ |
| Package Short Url | https://bioconductor.org/packages/DEDS/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |