CoverageView
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see CoverageView.
Coverage visualization package for R
Bioconductor version: 3.9
This package provides a framework for the visualization of genome coverage profiles. It can be used for ChIP-seq experiments, but it can be also used for genome-wide nucleosome positioning experiments or other experiment types where it is important to have a framework in order to inspect how the coverage distributed across the genome
Author: Ernesto Lowy
Maintainer: Ernesto Lowy <ernestolowy at gmail.com>
citation("CoverageView")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CoverageView")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CoverageView")| Easy visualization of the read coverage | R Script | |
| Reference Manual |
Details
| biocViews | ChIPSeq, ImmunoOncology, RNASeq, Sequencing, Software, Technology, Visualization |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), methods, Rsamtools(>= 1.19.17), rtracklayer |
| Imports | S4Vectors(>= 0.7.21), IRanges(>= 2.3.23), GenomicRanges, GenomicAlignments, parallel, tools |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CoverageView_1.22.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | CoverageView_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CoverageView |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CoverageView |
| Bioc Package Browser | https://code.bioconductor.org/browse/CoverageView/ |
| Package Short Url | https://bioconductor.org/packages/CoverageView/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |