CNORfuzzy
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see CNORfuzzy.
Addon to CellNOptR: Fuzzy Logic
Bioconductor version: 3.9
This package is an extension to CellNOptR. It contains additional functionality needed to simulate and train a prior knowledge network to experimental data using constrained fuzzy logic (cFL, rather than Boolean logic as is the case in CellNOptR). Additionally, this package will contain functions to use for the compilation of multiple optimization results (either Boolean or cFL).
Author: M. Morris, T. Cokelaer
Maintainer: T. Cokelaer <cokelaer at ebi.ac.uk>
citation("CNORfuzzy")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CNORfuzzy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CNORfuzzy")| Main vignette:Playing with networks using CNORfuzzyl | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Network, Software |
| Version | 1.26.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.15.0), CellNOptR(>= 1.4.0), nloptr (>= 0.8.5) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | xtable, Rgraphviz, RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CNORfuzzy_1.26.0.tar.gz |
| Windows Binary | CNORfuzzy_1.26.0.zip |
| Mac OS X 10.11 (El Capitan) | CNORfuzzy_1.26.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CNORfuzzy |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CNORfuzzy |
| Bioc Package Browser | https://code.bioconductor.org/browse/CNORfuzzy/ |
| Package Short Url | https://bioconductor.org/packages/CNORfuzzy/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |