BaseSpaceR
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BaseSpaceR.
R SDK for BaseSpace RESTful API
Bioconductor version: 3.9
A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.
Author: Adrian Alexa
Maintainer: Jared O'Connell <joconnell at illumina.com>
Citation (from within R, enter
citation("BaseSpaceR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BaseSpaceR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BaseSpaceR")| BaseSpaceR | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ConnectTools, DataImport, DataRepresentation, Genetics, HighThroughputSequencing, Infrastructure, Sequencing, Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
| License | Apache License 2.0 |
| Depends | R (>= 2.15.0), RCurl, RJSONIO |
| Imports | methods |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, IRanges, Rsamtools |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BaseSpaceR_1.28.0.tar.gz |
| Windows Binary | BaseSpaceR_1.28.0.zip |
| Mac OS X 10.11 (El Capitan) | BaseSpaceR_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BaseSpaceR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BaseSpaceR |
| Bioc Package Browser | https://code.bioconductor.org/browse/BaseSpaceR/ |
| Package Short Url | https://bioconductor.org/packages/BaseSpaceR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |