BADER
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BADER.
Bayesian Analysis of Differential Expression in RNA Sequencing Data
Bioconductor version: 3.9
For RNA sequencing count data, BADER fits a Bayesian hierarchical model. The algorithm returns the posterior probability of differential expression for each gene between two groups A and B. The joint posterior distribution of the variables in the model can be returned in the form of posterior samples, which can be used for further down-stream analyses such as gene set enrichment.
Author: Andreas Neudecker, Matthias Katzfuss
Maintainer: Andreas Neudecker <a.neudecker at arcor.de>
citation("BADER")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BADER")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BADER")| Analysing RNA-Seq data with the "BADER" package | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, ImmunoOncology, RNASeq, SAGE, Sequencing, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL-2 |
| Depends | |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | pasilla(>= 0.2.10) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BADER_1.22.0.tar.gz |
| Windows Binary | BADER_1.22.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | BADER_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BADER |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BADER |
| Bioc Package Browser | https://code.bioconductor.org/browse/BADER/ |
| Package Short Url | https://bioconductor.org/packages/BADER/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |