ArrayTV
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ArrayTV.
Implementation of wave correction for arrays
Bioconductor version: 3.9
Wave correction for genotyping and copy number arrays
Author: Eitan Halper-Stromberg
Maintainer: Eitan Halper-Stromberg <Eitan177 at gmail.com>
Citation (from within R, enter
citation("ArrayTV")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ArrayTV")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ArrayTV")| ArrayTV Vignette | R Script | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.14) |
| Imports | methods, foreach, S4Vectors(>= 0.9.25), IRanges(>= 2.13.24), DNAcopy, oligoClasses(>= 1.21.3) |
| System Requirements | |
| URL |
See More
| Suggests | RColorBrewer, crlmm, ff, BSgenome.Hsapiens.UCSC.hg18, BSgenome.Hsapiens.UCSC.hg19, lattice, latticeExtra, RUnit, BiocGenerics |
| Linking To | |
| Enhances | doMC, doSNOW, doParallel |
| Depends On Me | |
| Imports Me | |
| Suggests Me | VanillaICE |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ArrayTV_1.22.0.tar.gz |
| Windows Binary | ArrayTV_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | ArrayTV_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ArrayTV |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ArrayTV |
| Bioc Package Browser | https://code.bioconductor.org/browse/ArrayTV/ |
| Package Short Url | https://bioconductor.org/packages/ArrayTV/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |