ArrayExpress
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ArrayExpress.
Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Bioconductor version: 3.9
Access the ArrayExpress Repository at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Author: Audrey Kauffmann, Ibrahim Emam, Michael Schubert
Maintainer: Suhaib Mohammed <suhaib at ebi.ac.uk>
Citation (from within R, enter
citation("ArrayExpress")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ArrayExpress")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ArrayExpress")| ArrayExpress: Import and convert ArrayExpress data sets into R object | R Script | |
| Reference Manual |
Details
| biocViews | DataImport, Microarray, OneChannel, Software, TwoChannel |
| Version | 1.44.0 |
| In Bioconductor since | BioC 2.3 (R-2.8) (15.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.9.0), Biobase(>= 2.4.0) |
| Imports | XML, oligo, limma |
| System Requirements | |
| URL |
See More
| Suggests | affy |
| Linking To | |
| Enhances | |
| Depends On Me | DrugVsDisease, maEndToEnd |
| Imports Me | |
| Suggests Me | gCMAPWeb, Hiiragi2013 |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ArrayExpress_1.44.0.tar.gz |
| Windows Binary | ArrayExpress_1.44.0.zip |
| Mac OS X 10.11 (El Capitan) | ArrayExpress_1.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ArrayExpress |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ArrayExpress |
| Bioc Package Browser | https://code.bioconductor.org/browse/ArrayExpress/ |
| Package Short Url | https://bioconductor.org/packages/ArrayExpress/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |