AIMS
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see AIMS.
AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype
Bioconductor version: 3.9
This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.
Author: Eric R. Paquet, Michael T. Hallett
Maintainer: Eric R Paquet <eric.r.paquet at gmail.com>
citation("AIMS")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AIMS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AIMS")| AIMS An Introduction (HowTo) | R Script | |
| Reference Manual | ||
| README | Text |
Details
| biocViews | Classification, GeneExpression, ImmunoOncology, Microarray, RNASeq, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), e1071, Biobase |
| Imports | |
| System Requirements | |
| URL | http://www.bci.mcgill.ca/AIMS |
See More
| Suggests | breastCancerVDX, hgu133a.db, RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | genefu |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AIMS_1.16.0.tar.gz |
| Windows Binary | AIMS_1.16.0.zip |
| Mac OS X 10.11 (El Capitan) | AIMS_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AIMS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AIMS |
| Bioc Package Browser | https://code.bioconductor.org/browse/AIMS/ |
| Package Short Url | https://bioconductor.org/packages/AIMS/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |