pcxnData

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see pcxnData.

Correlation coefficients and p values between pre-defined pathway/gene sets

Bioconductor version: 3.8

PCxN database contains correlation coefficients and p values between pre-defined gene sets within MSigDB H hallmark gene sets, MSigDB C2 CP (Canonical pathways), MSigDB C5 GO BP gene sets and Pathprint respectively, as well as adjusted pathway correlations to account for the shared genes between pathway pairs.

Author: Sokratis Kariotis, Yered Pita-Juarez, Wenbin Wei, Winston Hide

Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>

Citation (from within R, enter citation("pcxnData")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pcxnData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pcxnData")

pcxnData	PDF	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExpressionData, GEO, Homo_sapiens_Data, MicroarrayData, OneChannelData, PathwayInteractionDatabase
Version	2.4.0
License	MIT + file LICENSE
Depends	R (>= 3.4)
Imports
System Requirements
URL

Suggests	pcxn
Linking To
Enhances
Depends On Me	pcxn
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pcxnData_2.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/pcxnData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pcxnData
Package Short Url	https://bioconductor.org/packages/pcxnData/
Package Downloads Report	Download Stats