etec16s
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see etec16s.
Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment
Bioconductor version: 3.8
16S rRNA gene sequencing data to study changes in the faecal microbiota of 12 volunteers during a human challenge study with ETEC (H10407) and subsequent treatment with ciprofloxacin.
Author: Joseph N. Paulson
Maintainer: Joseph N. Paulson <jpaulson at jimmy.harvard.edu>
citation("etec16s")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("etec16s")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("etec16s")| etec16s | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, MicrobiomeData, SequencingData |
| Version | 1.10.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.3), Biobase, metagenomeSeq(>= 1.12.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | metavizr |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | etec16s_1.10.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/etec16s |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/etec16s |
| Package Short Url | https://bioconductor.org/packages/etec16s/ |
| Package Downloads Report | Download Stats |