cheung2010

DOI: 10.18129/B9.bioc.cheung2010    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of cheung2010; for the stable release version, see cheung2010.

resources for genetics of gene expression based on Cheung et al 2010

Bioconductor version: Development (3.8)

Data resources related to the PLoS Biology paper Polymorphic Cis- and Trans-Regulation of Human Gene Expression, including small-footprint smlSet support for 147 hgfocus arrays and corresponding HapMap genotypes at 1.3 million SNP; 0.0.22+ includes cheung_eset... from Leek et al RECOUNT myrna output

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cheung2010")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cheung2010")

 

PDF	R Script	cheungTrans: checking trans eQTL with hgfocus arrays
PDF		Reference Manual

Details

biocViews	ExperimentData, HapMap, Homo_sapiens_Data, RNASeqData, SNPData, SequencingData
Version	0.17.3
License	Artistic-2.0
Depends	R (>= 2.13.0), Biobase, GGtools, GenomicRanges, hgfocus.db
Imports	AnnotationDbi
LinkingTo
Suggests	SNPlocs.Hsapiens.dbSNP144.GRCh37
SystemRequirements
Enhances	parallel
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cheung2010_0.17.3.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/cheung2010
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cheung2010
Package Short Url	http://bioconductor.org/packages/cheung2010/
Package Downloads Report	Download Stats