RNAseqData.HNRNPC.bam.chr14
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see RNAseqData.HNRNPC.bam.chr14.
Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells
Bioconductor version: 3.8
The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.
Author: Hervé Pagès
Maintainer: Hervé Pagès <hpages at fredhutch.org>
citation("RNAseqData.HNRNPC.bam.chr14")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RNAseqData.HNRNPC.bam.chr14")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ArrayExpress, ExperimentData, GEO, Genome, Homo_sapiens_Data, NCI, RNASeqData, SequencingData |
| Version | 0.20.0 |
| License | LGPL |
| Depends | |
| Imports | |
| System Requirements | |
| URL | http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/ |
See More
| Suggests | GenomicAlignments, BiocManager |
| Linking To | |
| Enhances | |
| Depends On Me | samExploreR, sequencing |
| Imports Me | |
| Suggests Me | BiocParallel, GenomicAlignments, GenomicFiles, GenomicRanges, roar, Rsamtools, SplicingGraphs |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RNAseqData.HNRNPC.bam.chr14_0.20.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RNAseqData.HNRNPC.bam.chr14 |
| Package Short Url | https://bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14/ |
| Package Downloads Report | Download Stats |