JctSeqData
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see JctSeqData.
Example Junction Count data for use with JunctionSeq
Bioconductor version: 3.8
Junction count data from an example dataset taken from a subset of the RNA-seq reads from six samples. Data was subsampled and modified to provide edge cases for testing and to reduce file sizes.
Author: Stephen Hartley [aut, cre] (PhD)
Maintainer: Stephen Hartley <JunctionSeq-contact at list.nih.gov>
citation("JctSeqData")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("JctSeqData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("JctSeqData")| Example Walkthrough | |
| Reference Manual | |
| NEWS | Text |
| LICENSE | Text |
Details
| biocViews | ExperimentData, GEO, Genome, RNASeqData, Rattus_norvegicus_Data, RepositoryData |
| Version | 1.12.0 |
| License | file LICENSE |
| Depends | R (>= 3.3) |
| Imports | |
| System Requirements | |
| URL | http://hartleys.github.io/JunctionSeq/ |
| Bug Reports | http://github.com/hartleys/JunctionSeq/issues |
See More
| Suggests | knitr, BiocStyle, DESeq2, DEXSeq, edgeR, JunctionSeq |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | JunctionSeq |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | JctSeqData_1.12.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/JctSeqData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/JctSeqData |
| Package Short Url | https://bioconductor.org/packages/JctSeqData/ |
| Package Downloads Report | Download Stats |