HiCDataLymphoblast
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see HiCDataLymphoblast.
Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009
Bioconductor version: 3.8
The HiC data from human lymphoblastoid cell line (HindIII restriction) was retrieved from the sequence read archive and two ends of the paired reads were aligned separately with bowtie.
Author: Borbala Mifsud
Maintainer: Borbala Mifsud <Borbala.Mifsud at cancer.org.uk>
citation("HiCDataLymphoblast")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HiCDataLymphoblast")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HiCDataLymphoblast")| package_vignettes.pdf | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, Homo_sapiens_Data |
| Version | 1.18.0 |
| License | GPL-3 |
| Depends | |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | GOTHiC, ShortRead |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | GOTHiC |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HiCDataLymphoblast_1.18.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HiCDataLymphoblast |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HiCDataLymphoblast |
| Package Short Url | https://bioconductor.org/packages/HiCDataLymphoblast/ |
| Package Downloads Report | Download Stats |