ABAData
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ABAData.
Averaged gene expression in human brain regions from Allen Brain Atlas
Bioconductor version: 3.8
Provides the data for the gene expression enrichment analysis conducted in the package 'ABAEnrichment'. The package includes three datasets which are derived from the Allen Brain Atlas: (1) Gene expression data from Human Brain (adults) averaged across donors, (2) Gene expression data from the Developing Human Brain pooled into five age categories and averaged across donors and (3) a developmental effect score based on the Developing Human Brain expression data. All datasets are restricted to protein coding genes.
Author: Steffi Grote
Maintainer: Steffi Grote <steffi_grote at eva.mpg.de>
citation("ABAData")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ABAData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ABAData")| ABAData: gene expression data to use with enrichment analysis package ABAEnrichment | HTML | R Script |
| Reference Manual |
Details
| biocViews | ExperimentData, ExpressionData, Homo_sapiens_Data, MicroarrayData, RNASeqData |
| Version | 1.12.0 |
| License | GPL (>= 2) |
| Depends | R (>= 3.2) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, ABAEnrichment |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | ABAEnrichment |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ABAData_1.12.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ABAData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ABAData |
| Package Short Url | https://bioconductor.org/packages/ABAData/ |
| Package Downloads Report | Download Stats |