srnadiff
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see srnadiff.
Differential Expression of Small RNA-Seq
Bioconductor version: 3.8
Differential expression of small RNA-seq when reference annotation is not given.
Author: Zytnicki Matthias [aut, cre]
Maintainer: Matthias Zytnicki <matthias.zytnicki at inra.fr>
Citation (from within R, enter
citation("srnadiff")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("srnadiff")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("srnadiff")
Vignette Title | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Coverage, DifferentialExpression, Epigenetics, GeneExpression, ImmunoOncology, Preprocessing, SmallRNA, Software, StatisticalMethod |
Version | 1.2.1 |
In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
License | GPL-3 |
Depends | R (>= 3.5) |
Imports | Rcpp (>= 0.12.8), methods, utils, devtools, BiocStyle, S4Vectors, GenomeInfoDb, rtracklayer, SummarizedExperiment, IRanges, GenomicRanges, DESeq2, Rsamtools, GenomicFeatures, GenomicAlignments, ggplot2, BiocParallel |
System Requirements | C++11 |
URL |
See More
Suggests | knitr, rmarkdown, testthat |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | srnadiff_1.2.1.tar.gz |
Windows Binary | srnadiff_1.2.1.zip |
Mac OS X 10.11 (El Capitan) | srnadiff_1.2.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/srnadiff |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/srnadiff |
Bioc Package Browser | https://code.bioconductor.org/browse/srnadiff/ |
Package Short Url | https://bioconductor.org/packages/srnadiff/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.8 | Source Archive |