rWikiPathways
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see rWikiPathways.
rWikiPathways - R client library for the WikiPathways API
Bioconductor version: 3.8
Use this package to interface with the WikiPathways API.
Author: Egon Willighagen [aut, cre] 
, Alex Pico [aut]
Maintainer: Egon Willighagen <egon.willighagen at gmail.com>, Alexander Pico <alex.pico at gladstone.ucsf.edu>
Citation (from within R, enter
citation("rWikiPathways")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rWikiPathways")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rWikiPathways")| 1. Overview | HTML | R Script |
| 2. rWikiPathways and BridgeDbR | HTML | R Script |
| 3. rWikiPathways and RCy3 | HTML | R Script |
| 4. Pathway Analysis | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | GraphAndNetwork, Metabolomics, Network, Software, ThirdPartyClient, Visualization |
| Version | 1.2.1 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.5) |
| Imports | caTools, httr, RJSONIO, utils, XML |
| System Requirements | |
| URL | https://github.com/wikipathways/rwikipathways |
| Bug Reports | https://github.com/wikipathways/rwikipathways/issues |
See More
| Suggests | testthat, BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | TRONCO |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rWikiPathways_1.2.1.tar.gz |
| Windows Binary | rWikiPathways_1.2.1.zip |
| Mac OS X 10.11 (El Capitan) | rWikiPathways_1.2.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rWikiPathways |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rWikiPathways |
| Bioc Package Browser | https://code.bioconductor.org/browse/rWikiPathways/ |
| Package Short Url | https://bioconductor.org/packages/rWikiPathways/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |