nethet
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see nethet.
A bioconductor package for high-dimensional exploration of biological network heterogeneity
Bioconductor version: 3.8
Package nethet is an implementation of statistical solid methodology enabling the analysis of network heterogeneity from high-dimensional data. It combines several implementations of recent statistical innovations useful for estimation and comparison of networks in a heterogeneous, high-dimensional setting. In particular, we provide code for formal two-sample testing in Gaussian graphical models (differential network and GGM-GSA; Stadler and Mukherjee, 2013, 2014) and make a novel network-based clustering algorithm available (mixed graphical lasso, Stadler and Mukherjee, 2013).
Author: Nicolas Staedler, Frank Dondelinger
Maintainer: Nicolas Staedler <staedler.n at gmail.com>, Frank Dondelinger <fdondelinger.work at gmail.com>
citation("nethet")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("nethet")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("nethet")
nethet | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Clustering, GraphAndNetwork, Software |
Version | 1.14.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
License | GPL-2 |
Depends | |
Imports | glasso, mvtnorm, parcor, GeneNet, huge, CompQuadForm, ggm, mclust, parallel, GSA, limma, multtest, ICSNP, glmnet, network, ggplot2 |
System Requirements | |
URL |
See More
Suggests | knitr, xtable, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | nethet_1.14.0.tar.gz |
Windows Binary | nethet_1.14.0.zip |
Mac OS X 10.11 (El Capitan) | nethet_1.14.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/nethet |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/nethet |
Bioc Package Browser | https://code.bioconductor.org/browse/nethet/ |
Package Short Url | https://bioconductor.org/packages/nethet/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.8 | Source Archive |