dSimer
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see dSimer.
Integration of Disease Similarity Methods
Bioconductor version: 3.8
dSimer is an R package which provides computation of nine methods for measuring disease-disease similarity, including a standard cosine similarity measure and eight function-based methods. The disease similarity matrix obtained from these nine methods can be visualized through heatmap and network. Biological data widely used in disease-disease associations study are also provided by dSimer.
Author: Min Li <limin at mail.csu.edu.cn>, Peng Ni <nipeng at csu.edu.cn> with contributions from Zhihui Fei and Ping Huang.
Maintainer: Peng Ni <nipeng at csu.edu.cn>
citation("dSimer")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("dSimer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("dSimer")| Integration of Disease Similarity Methods | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Network, Software, Visualization |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.3.0), igraph (>= 1.0.1) |
| Imports | stats, Rcpp (>= 0.11.3), ggplot2, reshape2, GO.db, org.Hs.eg.db, AnnotationDbi, graphics |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | dSimer_1.8.0.tar.gz |
| Windows Binary | dSimer_1.8.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | dSimer_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/dSimer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/dSimer |
| Bioc Package Browser | https://code.bioconductor.org/browse/dSimer/ |
| Package Short Url | https://bioconductor.org/packages/dSimer/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |