affyILM
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see affyILM.
Linear Model of background subtraction and the Langmuir isotherm
Bioconductor version: 3.8
affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.
Author: K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon
Maintainer: Myriam Kroll and Fabrice Berger <fabrice.berger at gmail.com>
citation("affyILM")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affyILM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("affyILM")| affyILM1.3.0 | R Script | |
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, Preprocessing, Software |
| Version | 1.34.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) (14 years) |
| License | GPL-3 |
| Depends | R (>= 2.10.0), methods, gcrma |
| Imports | affxparser(>= 1.16.0), affy, graphics, Biobase |
| System Requirements | |
| URL |
See More
| Suggests | AffymetrixDataTestFiles, hgfocusprobe |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | affyILM_1.34.0.tar.gz |
| Windows Binary | affyILM_1.34.0.zip |
| Mac OS X 10.11 (El Capitan) | affyILM_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/affyILM |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/affyILM |
| Bioc Package Browser | https://code.bioconductor.org/browse/affyILM/ |
| Package Short Url | https://bioconductor.org/packages/affyILM/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |