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ReQON

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see ReQON.

Recalibrating Quality Of Nucleotides


Bioconductor version: 3.8

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author: Christopher Cabanski, Keary Cavin, Chris Bizon

Maintainer: Christopher Cabanski <cabanskc at gmail.com>

Citation (from within R, enter citation("ReQON")):

Installation

To install this package, start R (version "3.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ReQON")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReQON")
ReQON Tutorial PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews HighThroughputSequencing, Preprocessing, QualityControl, Sequencing, Software
Version 1.28.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License GPL-2
Depends R (>= 3.0.2), Rsamtools, seqbias
Imports rJava, graphics, stats, utils, grDevices
System Requirements Java version >= 1.6
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ReQON_1.28.0.tar.gz
Windows Binary ReQON_1.28.0.zip
Mac OS X 10.11 (El Capitan) ReQON_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ReQON
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ReQON
Bioc Package Browser https://code.bioconductor.org/browse/ReQON/
Package Short Url https://bioconductor.org/packages/ReQON/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.8 Source Archive