IVAS

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see IVAS.

Identification of genetic Variants affecting Alternative Splicing

Installation

To install this package, start R (version "3.5") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IVAS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IVAS")

IVAS : Identification of genetic Variants affecting Alternative Splicing	PDF	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, GeneRegulation, ImmunoOncology, RNASeq, Regression, SNP, Sequencing, Software, Transcription
Version	2.2.1
In Bioconductor since	BioC 3.1 (R-3.2) (9 years)
License	GPL-2
Depends	R (> 3.0.0), GenomicFeatures, ggplot2, Biobase
Imports	doParallel, lme4, BiocGenerics, GenomicRanges, IRanges, foreach, AnnotationDbi, S4Vectors, GenomeInfoDb, ggfortify, grDevices, methods, Matrix, BiocParallel, utils, stats
System Requirements
URL

See More

Suggests	BiocStyle
Linking To
Enhances
Depends On Me	IMAS
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	IVAS_2.2.1.tar.gz
Windows Binary	IVAS_2.2.1.zip
Mac OS X 10.11 (El Capitan)	IVAS_2.2.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/IVAS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/IVAS
Bioc Package Browser	https://code.bioconductor.org/browse/IVAS/
Package Short Url	https://bioconductor.org/packages/IVAS/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.8	Source Archive