GoogleGenomics
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GoogleGenomics.
R Client for Google Genomics API
Bioconductor version: 3.8
Provides an R package to interact with the Google Genomics API.
Author: Cassie Doll, Nicole Deflaux
Maintainer: Siddhartha Bagaria <bagaria.siddhartha at gmail.com>
citation("GoogleGenomics")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GoogleGenomics")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GoogleGenomics")| Annotating Variants | HTML | R Script |
| Plotting Alignments | HTML | R Script |
| Reproducing Variant Annotation Results | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, Genetics, Software, ThirdPartyClient |
| Version | 2.4.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | Apache License (== 2.0) | file LICENSE |
| Depends | R (>= 3.1.0), GenomicAlignments(>= 1.0.1), VariantAnnotation |
| Imports | Biostrings, GenomeInfoDb, GenomicRanges, IRanges, httr, rjson, Rsamtools, S4Vectors(>= 0.9.25), Biobase, methods, utils |
| System Requirements | GNU make |
| URL | https://cloud.google.com/genomics/ |
| Bug Reports | https://github.com/Bioconductor/GoogleGenomics/issues |
See More
| Suggests | BiocStyle, RProtoBuf, httpuv, knitr, rmarkdown, testthat, ggbio, ggplot2, BSgenome.Hsapiens.UCSC.hg19, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GoogleGenomics_2.4.0.tar.gz |
| Windows Binary | GoogleGenomics_2.4.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | GoogleGenomics_2.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GoogleGenomics |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GoogleGenomics |
| Package Short Url | https://bioconductor.org/packages/GoogleGenomics/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |