Clonality
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Clonality.
Clonality testing
Bioconductor version: 3.8
Statistical tests for clonality versus independence of tumors from the same patient based on their LOH or genomewide copy number profiles
Author: Irina Ostrovnaya
Maintainer: Irina Ostrovnaya <ostrovni at mskcc.org>
citation("Clonality")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Clonality")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Clonality")| Clonality | R Script | |
| Reference Manual |
Details
| biocViews | Classification, CopyNumberVariation, Microarray, Software, aCGH |
| Version | 1.30.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13 years) |
| License | GPL-3 |
| Depends | R (>= 2.12.2), DNAcopy |
| Imports | grDevices, graphics, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | gdata |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Clonality_1.30.0.tar.gz |
| Windows Binary | Clonality_1.30.0.zip |
| Mac OS X 10.11 (El Capitan) | Clonality_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Clonality |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Clonality |
| Bioc Package Browser | https://code.bioconductor.org/browse/Clonality/ |
| Package Short Url | https://bioconductor.org/packages/Clonality/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |