Cardinal
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see Cardinal.
A mass spectrometry imaging toolbox for statistical analysis
Bioconductor version: 3.8
Implements statistical & computational tools for analyzing mass spectrometry imaging datasets, including methods for efficient pre-processing, spatial segmentation, and classification.
Author: Kylie A. Bemis <k.bemis at northeastern.edu>
Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>
citation("Cardinal")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Cardinal")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Cardinal")| Cardinal 2.0: User's Guide | R Script | |
| Cardinal design and development | R Script | |
| Cardinal: Analytic tools for mass spectrometry imaging | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification, Clustering, ImagingMassSpectrometry, ImmunoOncology, Infrastructure, Lipidomics, MassSpectrometry, Normalization, Proteomics, Software |
| Version | 2.0.4 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | Artistic-2.0 |
| Depends | BiocGenerics, BiocParallel, EBImage, graphics, methods, S4Vectors, stats, ProtGenerics |
| Imports | Biobase, dplyr, grid, irlba, lattice, magrittr, matter, signal, sp, stats4, utils |
| System Requirements | |
| URL | http://www.cardinalmsi.org |
See More
| Suggests | BiocStyle, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | CardinalWorkflows |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Cardinal_2.0.4.tar.gz |
| Windows Binary | Cardinal_2.0.4.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | Cardinal_2.0.4.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Cardinal |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Cardinal |
| Bioc Package Browser | https://code.bioconductor.org/browse/Cardinal/ |
| Package Short Url | https://bioconductor.org/packages/Cardinal/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |