msdata
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see msdata.
Various Mass Spectrometry raw data example files
Bioconductor version: 3.7
Ion Trap positive ionization mode data in mzData file format. Subset from 500-850 m/z and 1190-1310 seconds, incl. MS2 and MS3, intensity threshold 100.000. Extracts from FTICR Apex III, m/z 400-450. Subset of UPLC - Bruker micrOTOFq data, both mzData, mzML and mz5. LC-MSMS and MRM files from proteomics experiments. PSI mzIdentML example files for various search engines.
Author: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <lg390 at cam.ac.uk> with contriutions from Johannes Rainer
Maintainer: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <lg390 at cam.ac.uk>
citation("msdata")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("msdata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ExperimentData, MassSpectrometryData |
| Version | 0.20.0 |
| License | GPL (>= 2) |
| Depends | R (>= 2.10) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | xcms, mzR, MSnbase |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | IPO, MSnbase, mzR, RforProteomics, xcms |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | msdata_0.20.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/msdata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/msdata |
| Package Short Url | https://bioconductor.org/packages/msdata/ |
| Package Downloads Report | Download Stats |