OrganismDbi
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see OrganismDbi.
Software to enable the smooth interfacing of different database packages
Bioconductor version: 3.7
The package enables a simple unified interface to several annotation packages each of which has its own schema by taking advantage of the fact that each of these packages implements a select methods.
Author: Marc Carlson, Hervé Pagès, Martin Morgan, Valerie Obenchain
Maintainer: Biocore Data Team <maintainer at bioconductor.org>
citation("OrganismDbi")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OrganismDbi")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OrganismDbi")| OrganismDbi: A meta framework for Annotation Packages | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, Infrastructure, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.14.0), methods, BiocGenerics(>= 0.15.10), AnnotationDbi(>= 1.33.15), GenomicFeatures(>= 1.23.31) |
| Imports | Biobase, BiocInstaller, GenomicRanges(>= 1.31.13), graph, IRanges, RBGL, DBI, S4Vectors(>= 0.9.25), stats |
| System Requirements | |
| URL |
See More
| Suggests | Homo.sapiens, Rattus.norvegicus, BSgenome.Hsapiens.UCSC.hg19, AnnotationHub, FDb.UCSC.tRNAs, rtracklayer, biomaRt, RUnit, RMariaDB |
| Linking To | |
| Enhances | |
| Depends On Me | Homo.sapiens, Mus.musculus, Rattus.norvegicus |
| Imports Me | AnnotationHubData, epivizrData, ggbio |
| Suggests Me | ChIPpeakAnno, epivizrStandalone |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | OrganismDbi_1.22.0.tar.gz |
| Windows Binary | OrganismDbi_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | OrganismDbi_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/OrganismDbi |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OrganismDbi |
| Package Short Url | https://bioconductor.org/packages/OrganismDbi/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |