GSEABase
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see GSEABase.
Gene set enrichment data structures and methods
Bioconductor version: 3.7
This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).
Author: Martin Morgan, Seth Falcon, Robert Gentleman
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("GSEABase")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GSEABase")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSEABase")| An introduction to GSEABase | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Software |
| Version | 1.42.0 |
| In Bioconductor since | BioC 2.1 (R-2.6) (16.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.6.0), BiocGenerics(>= 0.13.8), Biobase(>= 2.17.8), annotate(>= 1.45.3), methods, graph(>= 1.37.2) |
| Imports | AnnotationDbi, XML |
| System Requirements | |
| URL |
See More
| Suggests | hgu95av2.db, GO.db, org.Hs.eg.db, Rgraphviz, ReportingTools, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | AGDEX, BicARE, CCPROMISE, cpvSNP, gCMAP, GSVAdata, npGSEA, PROMISE, singscore, splineTimeR, TissueEnrich |
| Imports Me | AUCell, BioCor, canceR, Category, categoryCompare, cellHTS2, EnrichmentBrowser, gCMAPWeb, gep2pep, GISPA, GSRI, GSVA, HTSanalyzeR, MIGSA, mogsa, oppar, PCpheno, phenoTest, POST, PROMISE, RcisTarget, ReportingTools, slalom, TFutils |
| Suggests Me | BiocCaseStudies, clusterProfiler, gage, GlobalAncova, globaltest, GOstats, GSAR, GSEAlm, MAST, PGSEA, phenoTest, TFEA.ChIP |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GSEABase_1.42.0.tar.gz |
| Windows Binary | GSEABase_1.42.0.zip |
| Mac OS X 10.11 (El Capitan) | GSEABase_1.42.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GSEABase |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GSEABase |
| Package Short Url | https://bioconductor.org/packages/GSEABase/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |