ExperimentHub
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see ExperimentHub.
Client to access ExperimentHub resources
Bioconductor version: 3.7
This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.
Author: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("ExperimentHub")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ExperimentHub")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ExperimentHub")
Creating An ExperimentHub Package | HTML | R Script |
ExperimentHub: Access the ExperimentHub Web Service | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, GUI, Infrastructure, Software, ThirdPartyClient |
Version | 1.6.1 |
In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
License | Artistic-2.0 |
Depends | methods, BiocGenerics(>= 0.15.10), AnnotationHub(>= 2.9.11) |
Imports | utils, S4Vectors, BiocInstaller, curl |
System Requirements | |
URL |
See More
Suggests | knitr, BiocStyle |
Linking To | |
Enhances | ExperimentHubData |
Depends On Me | alpineData, CellMapperData, curatedMetagenomicData, HDCytoData, HumanAffyData, MetaGxBreast, MetaGxOvarian, MetaGxOvarian, MetaGxPancreas, restfulSEData, SeqSQC |
Imports Me | CLLmethylation, curatedTCGAData, ExperimentHubData, GSEABenchmarkeR, HarmonizedTCGAData, HMP16SData, restfulSE, TENxBrainData |
Suggests Me | ANF, AnnotationHub, CellMapper, GSE62944, tissueTreg |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ExperimentHub_1.6.1.tar.gz |
Windows Binary | ExperimentHub_1.6.1.zip |
Mac OS X 10.11 (El Capitan) | ExperimentHub_1.6.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ExperimentHub |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ExperimentHub |
Bioc Package Browser | https://code.bioconductor.org/browse/ExperimentHub/ |
Package Short Url | https://bioconductor.org/packages/ExperimentHub/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |